Journal Publications
- Parmaki S, Tsipa A, Vasquez MI, Gonçalves JMJ, Hadjiadamou I, Ferreira FC, Afonso CAM, Drouza C, Koutinas M. (2020). Resolution of alkaloid racemate: a novel microbial approach for the production of enantiopure lupanine via industrial wastewater valorization. Microbial Cell Factory, 19:67.
- Kyriakou M, Chatziiona VK, Costa, CN, Kallis M, Koutsokeras L, Constantinides G, Koutinas M. (2019). Biowaste-based biochar: A new strategy for fermentative bioethanol overproduction via whole-cell immobilization. Applied Energy, 242, 480-491.
- Koutinas M, Vasquez MI, Nicolaou E, Pashali P, Kyriakou E, Loizou E, Papadaki A, Koutinas AA, Vyrides I. 2019. Biodegradation and toxicity of emerging contaminants: Isolation of an exopolysaccharide-producing Sphingomonas sp. for ionic liquids bioremediation. Journal of hazardous materials, 365:88-96
- Patsalou M, Samanides CG, Protopapa E, Stavrinou S, Vyrides I, Koutinas M. 2018. A citrus peel waste biorefinery for ethanol and methane production. Molecules, 24:2451
- Tsipa A, Koutinas M, Usaku C, Mantalaris A. 2018. Optimal bioprocess design through a gene regulatory network – growth kinetic hybrid model: Towards Replacing Monod kinetics. Metabolic Engineering, 48:129-137
- Parmaki S, Vyrides I, Vasquez MI, Hartman V, Zacharia I, Hadjiadamou I, Barbeitos CBM, Ferreira FC, Afonso CAM, Drouza C, Koutinas M. 2018. Bioconversion of alkaloids to high-value chemicals: Comparative analysis of newly isolated lupanine degrading strains. Chemosphere, 193:50-59
- Koutinas M, Yiangou C, Osório NM, Ioannou K, Canet A, Valero F, Ferreira-Dias S. 2018. Application of commercial and non-commercial immobilized lipases for biocatalytic production of ethyl lactate in organic solvents. Bioresource Technology, 247:496-503.
- Negro V, Montoneri E, Negre M, Fabbri G, Boero V, Solaro S, Antonini M, Koutinas A, Koutinas M, Vlysidis A, Konstantinidis V, Mainero D. 2018. Compost stream as a potential biomass for humic acid production: Focus on compost seasonal and geographical variability. Procedia Environmental Science, Engineering and Management, 5:133-138.
- Patsalou M, Menikea KK, Makri E, Vasquez M, Drouza C, Koutinas M. 2017. Development of a citrus peel-based biorefinery strategy for the production of succinic acid. Journal of Cleaner Production, 166:706-716
- Papadaki A, Androutsopoulos N, Patsalou M, Koutinas M, Kopsahelis N, Papanikolaou S, Koutinas AA. 2017. Biotechnological production of fumaric acid: The effect of morphology of Rhizopusarrhizus NRRL 2582. Fermentation, 3:33.
- Tsipa A, Koutinas M, Vernardis SI, Mantalaris A. 2017. The impact of succinate trace on pWW0 and ortho-cleavage pathway transcription in Pseudomonas putida mt-2 during toluene biodegradation. Bioresource Technology 234:397-405
- Pateraki C, Patsalou M, Vlysidis A, Kopsahelis N, Webb C, Koutinas AA, Koutinas M. 2016. Actinobacillus succinogenes: Advances on succinic acid production and prospects for development of integrated biorefineries. Biochemical Engineering Journal, 112:285-303.
- Tsipa A, Koutinas M, Pistikopoulos EN, Mantalaris A. 2016. Transcriptional kinetics of the cross-talk between the ortho-cleavage and TOL pathways of toluene biodegradation in Pseudomonas putida mt-2. Journal of Biotechnology, 228:112-123.
- Koutinas M, Patsalou M, Stavrinou S, Vyrides I. 2016. High temperature alcoholic fermentation of orange peel by the newly isolated thermotolerant Pichia kudriavzevii KVMP10. Letters in Applied Microbiology 62:75-83.
- Vyrides I, Agathangelou M, Dimitriou R, Souroullas K, Salamex A, Ioannou A, Koutinas M. 2015. Novel Halomonas sp. B15 isolated from Larnaca Salt Lake in Cyprus that generates vanillin and vanillic acid from ferulic acid. World Journal of Microbiology and Biotechnology 31:1291-1296.
- Drakou E-M, Koutinas M, Pantelides I, Tsolakidou M, Vyrides I. 2015. Insights into the metabolic basis of the halotolerant Pseudomonas aeruginosa strain LVD-10 during toluene biodegradation. International Biodeterioration & Biodegradation 99:85-94.
- Turon X, Venus J, Arshadi M, Koutinas M, Lin CSK, Koutinas A. 2014. Food waste and byproduct valorization through bio-processing: Opportunities and challenges. Bioresources 9:5774-5777.
- Koutinas M, Menelaou M, Nicolaou EN. 2014. Development of a hybrid fermentation-enzymatic bioprocess for the production of ethyl lactate from dairy waste. Bioresource Technology 165:343-349.
- Koutinas M, Kiparissides A, Pistikopoulos EN, Mantalaris A. 2012. Bioprocess systems engineering: transferring traditional process engineering principles to industrial biotechnology. Computational and Structural Biotechnology Journal 3:e201210022.
- Koutinas M, Kiparissides A, Lam M-C, Silva-Rocha R, Godinho M, de Lorenzo V, Martins dos Santos VAP, Pistikopoulos EN, Mantalaris A. 2011. Imroving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid. Biochemical Engineering Journal 55:108-118.
- Koutinas M, Kiparissides A, Silva-Rocha R, Lam M-C, Martins dos Santos VAP, de Lorenzo V, Pistikopoulos EN, Mantalaris A. 2011. Linking genes to microbial growth kinetics – an integrated biochemical systems engineering approach. Metabolic Engineering 13:401-413.
- Kiparissides A, Koutinas M, Kontoravdi C, Mantalaris A, Pistikopoulos EN. 2011. ‘Closing the loop’ in biological systems modelling - from the in silico to the in vitro. Automatica 47:1147-1155.
- Kiparissides A, Koutinas M, Moss T, Newman J, Pistikopoulos EN, Mantalaris A. 2011. Modelling the delta1/notch1 pathway; in search of the mediator(s) of neural stem cell differentiation. PLoS One 6:e14668.
- Koutinas M, Lam M-C, Kiparissides A, Silva-Rocha R, Godinho M, Livingston AG, Pistikopoulos EN, de Lorenzo V, Martins dos Santos VAP, Mantalaris A. 2010. The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.. Environmental Microbiology 12:1705-1718.
- Koutinas M, Baptista IIR, Meniconi A, Peeva LG, Mantalaris A, Castro PML, Livingston AG. 2007. The use of an oil-absorber-bioscrubber system during biodegradation of sequentially alternating loadings of 1,2-dichloroethane and fluorobenzene in a waste gas. Chemical Engineering Science 62:5989-6001.
- Koutinas M, Baptista IIR, Peeva LG, Ferreira Jorge RM, Livingston AG. 2007. The use of an oil absorber as a strategy to overcome starvation periods in degrading 1,2-dichloroethane in waste gas. Biotechnology and Bioengineering 96:673-686.
- Koutinas M, Martin J, Peeva LG, Mantalaris A, Livingston AG. 2006. An oil-absorber-bioscrubber system to stabilise biotreatment of pollutants present in waste gas. Fluctuating loads of 1,2-dichloroethane. Environmental Science and Technology 40:595-602.
- Koutinas M, Peeva LG, Livingston AG. 2005. An attempt to compare the performance of bioscrubbers and biotrickling filters for degradation of ethyl acetate in gas streams. Journal of Chemical Technology and Biotechnology 80:1252-1260.
Book Chapters
- Patsalou M, Koutinas M. 2017. Food waste valorization for the production of added-value commodities: Focus on citrus peel waste as a feedstock for sustainable biorefineries. In: Municipal solid waste: Management strategies, challenges and future directions. Commack: Nova Science Publishers, Inc., ISBN: 978-1-53611-865-0.
- Kiparissides A, Koutinas M, Pistikopoulos EN, Mantalaris A. 2011. Model development and analysis of mammalian cell culture systems. In: Dynamic process modelling. pp: 403-440. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA. ISBN: 978-3-527-31696-0.
Conferences
- Patsalou M, Pateraki C, Vasquez M, Drouza C, Koutinas M. 2016. Bioprocess development for the production of succinic acid from orange peel waste. 4th International Conference on Sustainable Solid Waste Management (CYPRUS 2016), Limassol, Cyprus, 23-25 June 2016.
- Koutinas M, Kiparissides A, de Lorenzo V, Martins dos Santos VAP, Pistikopoulos EN, Mantalaris A. 2011. Predicting microbial growth kinetics with the use of genetic circuit models. Computer-Aided Chemical Engineering 29:1321-1325.
- Koutinas M, Kiparissides A, Lam M-C, Silva-Rocha R, de Lorenzo V, Martins dos Santos VAP, Pistikopoulos EN, Mantalaris A. 2010. Combining genetic circuit and microbial growth kinetic models: a challenge for biological modelling. Computer-Aided Chemical Engineering 28:301-306.